Structure Modelling WWW Servers

Caffeine

Server	Description
Metaservers	Analyze quality of other servers results
EVA	EVA continously and automatically analyses the quality of protein structure prediction servers
Homology modelling	Predict 3D structure from a.a. sequence
SwissModel	An homology modelling server using GROMOS96 minimization
CPHmodels	Protein structure prediction server using distance constraints
SDSC1	SDSC Protein Structure Homology Modeling Server
3D-JIGSAW	Comparative modelling server
3D-pssm	Protein Fold recognition using 1D and 3D profiles
3D structure analysis	Analyze the properties of your 3D structure
Domain Server	Assign and localize domains in a 3D structure
AMBER_SERVER	Minimize and analyze the energy of your 3D coordinate dataset
Structure Calculations	Structural Biology calculations
Surface/volume Calculations	Advanced Structural Biology calculations
Inter-residue contacts	Predict contacts among residues
PDGCON	Predict residue contacts based on correlated mutations derived from ultiple alignments
CORNET	Neural network based predictor of residue contacts
CONcons	predict contacts between all conserved and hydrophobic residues
Threading	Predict structure by threading methodology
3D-pssm	Threading prediction coupling 1D and 3D profiles, secondary structure and solvation data
FUGUE	Search a sequence against a database of profiles
loopp	Learning, observing and Outputting Proteins Patterns
Sausage	Sequence-structure Alignment Using Statistical Approach Guded by Experiment
Superfamily	protein domain assignment to SCOP superfamilies using an HMM library
Secondary structure	Predict structure from a.a. sequence
JPred	A consensus method for protein secondary structure prediction
PredictProtein	A server for sequence analysis and structure prediction running PHDSec, PHDAcc, PHDhtm, GLOBE, BLAST, MaxHom, TOPITS, COILS, CYSPRED, ProSite, SEG, ProDom and EvalSec
PHD Psi	Prediction server using FlowChart Methods & Versions PP and Methods META-PP
PSIpred	Structure prediction based on position-specific scoring matrices
PSSP	Prediction based on nearest-neighbor and neural networks
SECPRED	Secondary structure prediction based on neural networks
SAM-T99	Based on Hidden Markov Models
SSPro	Based on Bidirectional Recurrent Neural Networks
CYSPRED	Predict bonding state of cysteines
RCNPRED	Predict residue coordination numbers