The TINKER molecular modeling software provides a variety of methods to perform molecular modeling, with special features for biopolymers.

Here you will find WWW forms to help you work with some of the applications in the package. Not all the applications do have a WWW interface yet, and not all the functionality of the applications featured is supported. However, you will find that for most cases, these forms will fulfill your needs.

The following TINKER applications are supported under this WWW interface:

Application	Description	Help	Do it!
ANALYZE	Provides information about a specific molecular structure.
ANNEAL	Molecular dynamics simulated annealing computation.
DYNAMIC	Molecular dynamics (MD) or stochastic dynamics (SD) computation.
GDA	Straub's Gaussian Density Annealing algorithm
MINIMIZE	Nonlinear conjugate gradient minimization
NEWTON	Truncated Newton minimization
OPTIMIZE	Variable metric energy minimization
PSS	Potential smoothing and search algorithm for a "global" optimization
SNIFFER	Sniffer global optimization algorithm of Butler and Slaminka