CLUSTAL W (1.75) Multiple Sequence Alignments

Sequences to align
Upload file:
or enter data in box below
Data formats accepted:
NBRF/PIR, EMBL/SwissProt, Pearson (Fasta), GDE, Clustal, GCG/MSF, RSF

See sample data
   
 
Program options
use FAST algorithm for the alignment
calculate NJ tree
Bootstrap NJ tree (# boostraps)

Other ClustalW options
Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22:4673-4680.
Zmasek C.M. and Eddy S.R. (2001) ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics, 17, 383-384. [PubMed] [Bioinformatics] [Google Scholar]

If you use Jalview in your work, please quote this publication.
Clamp, M., Cuff, J., Searle, S. M. and Barton, G. J. (2004), "The Jalview Java Alignment Editor," Bioinformatics, 20, 426-7